All functions
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bd_branch_numbers()
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Give branch numbering for BadiRate |
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bd_collect()
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Collect results files from BadiRate runs. |
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bd_decode_tree_ids()
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Decoding branch numbers to species compositions |
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bd_extract_gain()
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Extract and parse gain/loss information by the selected best models |
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bd_model_select()
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Model selection from likelihood test and wAIC measurment |
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prepare_badirate()
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Create BadiRate setup table and corresponding scripts for PBS job arrays |
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qstat()
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Wrapper to qstat command |
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qsub()
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Wrapper to qsub command |
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sbatch()
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Wrapper to sbatch command |
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split_orthogroups()
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Splitting and filtering orthogroups to individual files |
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squeue()
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Wrapper to queue command |